Computational & Systems Biology Program

The Quaid Morris Lab

Research

Quaid_Morris_Photo.jpg
Quaid Morris, PhD
Member

Our lab uses machine learning and artificial intelligence to do biomedical research, focusing on cancer evolution, gene regulation, clinical informatics, and gene function prediction. A key interest is the role of RNA-binding proteins (RBPs) in post-transcriptional regulation. We focus on developing computational and experimental techniques to determine the RNA specificities of RBPs (both sequence and structural) and use these specificities to predict their target transcripts, determine RBP function, and ultimately decipher the regulatory code. Another focus is reconstructing and modelling somatic evolution (pre- and post-cancer) using bulk and single-cell genomic data. In general, we are focused on using large, heterogeneous functional genomic datasets to uncover insights about gene function. Recently, we have becoming increasingly interested in using artificial intelligence and predictive analytics, along with electronic medical records, to inform patient care, particularly in the domain of auto-immune disease.

Quaid Morris Lab members

Publications Highlights

Sasse, A., Ray, D., Laverty, K.U., Tam, C.L., Albu, M., Zheng, H., Levdansky, Y., et al. (2025). A resource of RNA-binding protein motifs across eukaryotes reveals evolutionary dynamics and gene-regulatory function. Nature Biotechnology, 1-11.

Shi, R., Dalal, T., Fradkin, P., Koyyalagunta, D., Chhabria, S., Jung, A., Tam, C., et al. (2025). mRNABench: A curated benchmark for mature mRNA property and function prediction. bioRxiv, 2025.07.05.662870.

Koyyalagunta, D., Ganesh, K., & Morris, Q. (2025). Inferring cancer type-specific patterns of metastatic spread using Metient. bioRxiv, 2024.07.09.602790.

Harrigan, C.F., Campbell, K., Morris, Q., & Funnell, T. (2025). Damage and Misrepair Signatures: Compact Representations of Pan-cancer Mutational Processes. bioRxiv, 2025.05.29.656360.

Darmofal, M., Suman, S., Atwal, G., Toomey, M., Chen, J.F., Chang, J.C., et al. (2024). Deep-learning model for tumor-type prediction using targeted clinical genomic sequencing data. Cancer Discovery, 14(6), 1064-1081.

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People

Quaid_Morris_Photo.jpg

Quaid Morris, PhD

Member

  • Computational biologist Quaid Morris uses artificial intelligence techniques and develops machine learning algorithms to study gene regulation, cancer evolution, clinical informatics, and other topics in systems biology.
  • PhD, Massachusetts Institute of Technology
MorrisQ@mskcc.org
Email Address

Members

Ilyes Baali
Graduate Student
Graduate Student
Postdoctoral Fellow
Computational Biologist
Graduate Student
Graduate Student
Graduate Student
Graduate Student
Graduate Student
Graduate Student
Postdoctoral Fellow
Ellen T. Mammen
Senior Administrative Assistant
Postdoctoral Fellow
Harshit Sahay
Postdoctoral Fellow
Graduate Student
Postdoctoral Fellow
Graduate Student
Graduate Student
Research Scientist at Autodesk AI Lab
Postdoctoral Research Fellow, Memorial Sloan Kettering Cancer Center, New York
Research Intern, Facebook AI, Pittsburgh
Madison Darmofal
Graduate Student
Research Scientist, Deep Genomics
Research Associate in Yeung Lab at SickKids, Toronto
Associate Professor, Computer Science, University of Toronto
Postdoctoral Research Fellow, Vector Institute, Toronto
Data Scientist, BioSymetrics, Toronto
Graduate Student, University of Pennsylvania
Research Scientist, Ontario Institute for Cancer Research
Postdoctoral Research Fellow, Hughes Lab, Toronto
Associate Professor, Computer Science, Antalya Bilim University
Assistant Professor, Case Western University
Olga Lyudovyk
Graduate Student
Software Engineer at Amazon
Postdoctoral Fellow
Graduate Student
Associate Professor, Computer Science, University of Washington; Canada CIFAR AI Chair
Graduate Student
Graduate Student
Assistant Professor, Computer Science, University of California Davis
Research Assistant Professor in Computer Science, Stony Brook University
Research Scientist, DeepMind, London
Postdoctoral Research Fellow, Lunenfeld Research Institute, Toronto
Graduate Student
Graduate Student
Research Scientist, Silicon Valley start-up
Founder: Argmix - A Technology Consulting Firm Specializing in Machine Learning
Research Scientist at DeepMind, London

Achievements

  • Clarivate Web of Science Highly Cited Research (2018-present)
  • CIFAR Artificial Intelligence Chair (2018-present)
  • Assigned RNA-binding preferences to >20% of metazoan RNA-binding proteins (and >10% of eukaryotic RBPs) (w/ Timothy Hughes)
  • Developed GeneMANIA algorithm and website (w/ Gary Bader)

Open Positions

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Career Opportunities

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Disclosures

Members of the MSK Community often work with pharmaceutical, device, biotechnology, and life sciences companies, and other organizations outside of MSK, to find safe and effective cancer treatments, to improve patient care, and to educate the health care community. These activities outside of MSK further our mission, provide productive collaborations, and promote the practical application of scientific discoveries.

MSK requires doctors, faculty members, and leaders to report (“disclose”) the relationships and financial interests they have with external entities. As a commitment to transparency with our community, we make that information available to the public. Not all disclosed interests and relationships present conflicts of interest. MSK reviews all disclosed interests and relationships to assess whether a conflict of interest exists and whether formal COI management is needed.

Quaid Morris discloses the following relationships and financial interests:

No disclosures meeting criteria for time period


The information published here is a complement to other publicly reported data and is for a specific annual disclosure period. There may be differences between information on this and other public sites as a result of different reporting periods and/or the various ways relationships and financial interests are categorized by organizations that publish such data.


This page and data include information for a specific MSK annual disclosure period (January 1, 2024 through disclosure submission in spring 2025). This data reflects interests that may or may not still exist. This data is updated annually.

Learn more about MSK’s COI policies here. For questions regarding MSK’s COI-related policies and procedures, email MSK’s Compliance Office at ecoi@mskcc.org.


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